Functional analysis of the Alternaria brassicicola non-ribosomal peptide synthetase gene AbNPS2 reveals a role in conidial cell wall construction

Alternaria brassicicola is a necrotrophic pathogen causing black spot disease on virtually all cultivated Brassica crops worldwide. In many plant pathosystems fungal secondary metabolites derived from non-ribosomal peptide synthetases (NPSs) are phytotoxic virulence factors or are antibiotics thought to be important for niche competition with other micro-organisms. However, many of the functions of NPS genes and their products are largely unknown. In this study, we investigated the function of one of the A. brassicicola NPS genes, AbNPS2 . The predicted amino acid sequence of AbNPS2 showed high sequence similarity with A. brassicae , AbrePsy1, Cochliobolus heterostrophus , NPS4 and a Stagonospora nodorum NPS. The AbNPS2 open reading frame was predicted to be 22 kb in length and encodes a large protein (7195 amino acids) showing typical NPS modular organization. Gene expression analysis of AbNPS2 in wild-type fungus indicated that it is expressed almost exclusively in conidia and conidiophores, broadly in the reproductive developmental phase. AbNPS2 gene disruption mutants showed abnormal spore cell wall morphology and a decreased hydrophobicity phenotype. Conidia of abnps2 mutants displayed an aberrantly inflated cell wall and an increase in lipid bodies compared with wild-type. Further phenotypic analyses of abnps2 mutants showed decreased spore germination rates both in vitro and in vivo , and a marked reduction in sporulation in vivo compared with wild-type fungus. Moreover, virulence tests on Brassicas with abnps2 mutants revealed a significant reduction in lesion size compared with wild-type but only when aged spores were used in experiments. Collectively, these results indicate that AbNPS2 plays an important role in development and virulence.     

Evidence For the Presence of A Cdc2-Like Protein Kinase In the Dinoflagellate Crypthecodinium Cohnii

ABSTRACT. The unusual nature of mitosis and ancestral organization of the dinoflagellate nucleus prompted the question of whether the cdc 2-like histone H1 kinase, a presumed ubiquitous cell cycle regulator in eukaryotes, is present in these primitive organisms. Western blotting of Crypthecodinium cohnii protein extracts using antibody against the Pro-Ser-Thr-Ala-Ile-Arg-Glu (=PSTAIRE) amino acid sequence motif, conserved in all cdc 2 homologues known, revealed one prominent band corresponding to a protein with an apparent relative molecular weight ≈ 34,000, identical in mobility to that from HeLa cells and Physarum polycephalum , higher and lower eukaryotic controls, respectively. Incubation of C. cohnii cell lysates with p13 ^{suc 1}-sepharose beads, which preferentially, though not exclusively, bind p34 ^{cdc 2}, resulted in precipitation of a 34-kDa protein which was reactive with anti-PSTAIRE antibody, selectively competed for by the PSTAIRE peptide and able to phosphorylate histone H1 in vitro. We conclude that the dinoflagellate C. cohnii contains a protein very similar to the cdc 2 gene product from fission yeast and its homologues in all eukaryotes studied thus far.     

Endoparasitoids of larval Anomis privata (Lepidoptera: Noctuidae), major pest of Hibiscus syriacus (Columniferae: Malvaceae)

Endoparasitoids of Anomis privata larvae include five species in three families of two orders. In this work, two species of Hymenoptera Braconidae (Cotesia sp., Microplitis sp.), one species of Ichneumonidae (Mesochorus vittator) and two species of Diptera Tachinidae (Exorista (Podotachina) sorbillans, Timavia amoena) were investigated. Of the 261 larvae of A. privata examined, 32 had a parasite, so the rate of parasitism was 12.26%. Parasitism by taxon was the highest, at 10.35% (27 individuals), in Cotesia sp. in Hymenoptera Braconidae. Parasitoids of Braconidae and Ichneumonidae were larval parasitoids. A parasitic insect of Tachinidae was a larva–pupal parasitoid. Solitary parasitoids included Microplitis sp. in Braconidae and E. sorbillans in Tachinidae. Gregarious parasitoids included Cotesia sp. in Braconidae, M. vittator in Ichneumonidae and T. amoena in Tachinidae. There was also a multiparasitoid (T. amoena) and two superparasitoids (Cotesia sp., M. vittator). A larva of A. privata sought feed even after it was parasitized every parasitoid investigated in this study, so five species of parasitoids were all koinobiont.     

Protein profiling in human sera for identification of potential lung cancer biomarkers using antibody microarray

To identify potential biomarkers of lung cancer (LC), profiling of proteins in sera obtained from healthy and LC patients was determined using an antibody microarray. Based on our previous study on mRNA expression profiles between patients with LC and healthy persons, 19 proteins of interest were selected as targets for fabrication of an antibody microarray. Antibody to each protein and five nonspecific control antibodies were spotted onto a hydrogel‐coated glass slide and used for profiling of proteins in sera of LC patients in a two‐color fluorescence assay. Forty‐eight human sera samples were analyzed, and expression profiling of proteins were represented by the internally normalized ratio method. Six proteins were distinctly down‐regulated in sera of LC patients; this observation was validated by Wilcoxon test, false discovery rate, and Western blotting. Blind test of other 32 human sera using the antibody microarray followed by hierarchical clustering analysis revealed an approximate sensitivity of 88%, specificity of 80%, and an accuracy of 84%, respectively, in classifying the sera, which supports the potential of the six identified proteins as biomarkers for the prognosis of lung cancer.     

Insect herbivores associated with the introduced weed Bidens frondosa L. (Asteraceae) in Korea,and their potential role as augmentative biological control agents

The annual herb Bidens frondosa L., native to North America, is an invasive weed. Currently no information is available on the insect herbivores associated with this weed in Korea. A survey was carried out at two‐weekly intervals from May to October 2008 at two sites, and the incidence and abundance of various insect herbivores studied. A total nine species of insects was recorded and among them the defoliating caterpillar Hadjina chinensis (Wallengren) (Lepidoptera) was the only species known to have host plants restricted to genus Bidens. Further host specificity studies are required to evaluate the potential of this insect as a candidate for augmentative biological control agent for B. frondosa in Korea. All other insect species are either polyphagous or known crop pests.     

Pseudococcus orchidicola (Hemiptera: Pseudococcidae), a newly found mealybug pest,confused with P. longispinus in Korea

Pseudococcus longispinus, a notorious cosmopolitan pest species of mealybugs, known to be distributed indoors in Korea since 2002, is found to be mixed with another species, Pseudococcus orchidicola. Finding P. orchidicola as a pest of tropical plants in Korea is rather unexpected because of their main distribution in the Pacific area and South Asia. However, all the available information from morphology, molecule and advice on identification from mealybug specialists indicates this is the best match for P. orchidicola. Morphological, molecular and some biological notes on P. orchidicola are provided with some adult and nymphal images, and compared with P. longispinus. A full discussion mainly on identity and distribution of P. orchidicola is given.     

Natural variation in Early flowering1 contributes to early flowering in japonica rice under long days

Natural variation in heading‐date genes enables rice, a short‐day (SD) plant, to flower early under long‐day (LD) conditions at high latitudes. Through analysis of heading‐date quantitative trait loci (QTL) with F₇ recombinant inbred lines from the cross of early heading ‘H143’ and late heading ‘Milyang23 (M23)’, we found a minor‐effect Early Heading3 (EH3) QTL in the Hd16 region on chromosome 3. We found that Early flowering1 (EL1), encoding casein kinase I (CKI), is likely to be responsible for the EH3/Hd16 QTL, because a missense mutation occurred in the highly conserved serine/threonine kinase domain of EL1 in H143. A different missense mutation was found in the EL1 kinase domain in Koshihikari. In vitro kinase assays revealed that EL1/CKI in H143 and Koshihikari are non‐functional. In F_7:9 heterogeneous inbred family‐near isogenic lines (HNILs), HNIL(H143) flowered 13 days earlier than HNIL(M23) in LD, but not in SD, in which EL1 mainly acts as a LD‐dependent flowering repressor, down‐regulating Ehd1 expression. In the world rice collection, two types of non‐functional EL1 variants were found in japonica rice generally cultivated at high latitudes. These results indicate that natural variation in EL1 contributes to early heading for rice adaptation to LD in temperate and cooler regions.